Monday 25 March 2013

The gut microbiome and chronic fatigue syndrome

I've hinted before on this blog and its sister blog about how one of the most unappealing of interventions - fecal bacteriotherapy - is starting to make some waves in managing various conditions. I know its not everyone's cup of tea but the concept of transplanting whole stools or specific types of enteric bacteria from one person to another is actually providing some well needed relief for quite a few people.
Insert here.... @ Wikipedia  

If it sounds like an undesirable treatment option, put yourself in the shoes of someone who for example is suffering as result of infection due to C. difficile and the potential consequences that this can entail after other treatment options have been exhausted and then wonder again. Better still, have a look at that probiotic yoghurt drink that is sitting in your fridge and ponder the question: where did the 'special' bacteria included in this drink originally come from? (hint: 'donor zero' is probably smiling at all of us).

Whilst fecal bacteriotherapy is moving into more mainstream medicine circles for conditions linked to things like C.diff, various other states and diseases are also starting to be discussed with the s--t transplant in mind. One person in particular is leading these discussions, Dr Thomas Borody, following his groundbreaking work on triple therapy for H.pylori infection (see here), and some discussions on 'emerging' applications* (no pun intended). Indeed Dr Borody is quite the leading light when it comes to fecal bacteriotherapy.

I was particularly interested to read the paper by Borody and colleagues** looking at the potential application of bacteriotherapy to cases of chronic fatigue syndrome (CFS). Regular readers might already know of my tendency to stray into the research domain of CFS (and ME) on this blog and beyond not least because quite a bit of the research there seems to overlap with what I talk about with autism in mind (e.g. immune function, mitochondrial issues, even HERVs..).

Anyhow, with many thanks to Sarah Finlayson, one of Dr Borody's co-authors, for sending me a copy of their paper, a few points are worth noting:

  • This is a paper which kills two birds with one stone. On the one hand, there is quite a nice summary of CFS and the gut microbiome (hopefully this link still works for non-members). On the other hand, the paper describes the experiences of 60 patients with CFS attending Dr Borody's clinic some time in the mid-1990s and in receipt of transcolonoscopic (TC) and rectal infusions of "anaerobic bacterial culture". Distinct from the 'full works' of of a stool transplant or 'fecal microbiota transplantation (FMT)', bacteriotherapy involves the 'fusion of a mixture of 13 non-pathogenic enteric bacteria" which include those of the Bacteroidetes, Clostridia and E.coli families/phyla/species.
  • Every participant received at least one TC infusion; most also received a second rectal infusion (n=52); a small number received two days of additional rectal infusion (n=3). Actually, as you'll see in a minute, there was a bit more to this than what is mentioned in the methods section of the paper.
  • Results: it is slightly difficult to gauge what specific results were achieved from this trial given that participants were judged to be responders or non-responders at 4 weeks based on some fairly nebulous criteria. So for example, responders signified "a resolution of CFS symptoms (sleep deprivation, lethary/fatigue)" but without the paper actually saying how these outcomes were measured or what tools were used. I'd hazard a guess that it was a case of participant interview or questionnaire but I can't confirm this. 
  • On the basis of this responder / non-responder coding, 35 (58%) were judged responders to bacteriotherapy. This figure improved when initial non-responders (n=15) were given a second TC infusion "followed by rectal infusion (n=4) or an oral course of cultured bacteria (n=6)"; up to 42 / 60 (70%) responders.
  • Gastrointestinal (GI) symptoms were reported to be resolved in 37 of the 42 final responders.
  • Follow-up of participants some 15-20 years later (12 of the original cohort) suggested that over half of them remained free of their CFS symptoms; although importantly, some relapsed (5/12) between 18-36 months post-bacteriotherapy.

I probably don't need to highlight the fact that this was very much an observational case-series study over anything like a clinical trial. My initial excitement at reading this paper was very slightly dampened by the way results were reported and those all-important missing details regarding how the authors measured change over the period of baseline vs. bacteriotherapy. Even the reported resolution of GI symptoms leaves me asking questions like: what GI symptoms, how were they measured and who did the measuring? There are gaps in this work, make no mistake of that. Bear however in mind issues such as when this study was initially carried out and how the diagnostic criteria of CFS might not necessarily have been as well-defined as they are today. Just sayin.

I can also imagine some people are reading this post and thinking what the .... ! How can a condition like CFS be sensitive to a bacterial transplant, and what about those methods used to introduce such a therapy... yeah right. Bear in mind however that our nether regions are actually quite good routes of drug administration bypassing for example, hostile environments like the stomach and onward the first-pass effect. Indeed the question should be: would you prefer this to the insertion of a naso-gastric tube as is the other option when delivering bacteria to where it is needed? Your choice...

Having said all that I am still interested in this line of inquiry. The authors for example, suggest a possible link between "the resolution of gastrointestinal and CFS symptoms" and how this "supports the theory of a possible gastrointestinal-associated etiology, potentially arising from alterations to the bowel flora". I kinda speculated about the many faces (Man-E-Faces?) of CFS in a previous post on HERVs and ME (see here) and how the spectrum of CFS/ME might be just that, a spectrum. It strikes me that one could very easily investigate this possible sub-types issue within a well-defined population.

There is obviously more to do in this area of endeavour. As per a recent article I played a small hand in writing, the gut microbiome is a relatively uncharted area of medicine in terms of its links to health and wellbeing and indeed our often varied response to the pharmaceutics we all take potentially as a result of our gut bacterial composition. There are obvious important questions to ask about safety (the gut virome anyone?) and efficacy of interventions like bacteriotherapy particularly when applied to conditions of unknown origin like CFS/ME. Indeed, the desperation of some sufferers makes them very vulnerable to all kinds of potential intervention options which might not necessarily be right for them.

But that's not to say there isn't already research movement (no pun intended) in the area of the gut microbiome and CFS/ME as per Sanjay Shukla study (detailed here) which should be reporting quite soon. That added to the Michael Maes suggestion of issues with gut permeability in cases of CFS/ME (sound familiar?) makes for quite a few hypotheses being open for testing with much greater focus on rigour in research methodology.


* Borody TJ. & Khoruts A. Fecal microbiota transplantation and emerging applications. Nat Rev Gastroenterol Hepatol. 2011; 9: 88-96.

** Borody TJ. et al. The GI microbiome and its role in Chronic Fatigue Syndrome: A summary of bacteriotherapy. Journal of the Australasian College of Nutritional and Environmental Medicine. 2012; 31: 3-8.

----------- Thomas Borody, Anna Nowak, & Sarah Finlayson (2012). The GI microbiome and its role in Chronic Fatigue Syndrome: A summary of bacteriotherapy Journal of the Australasian College of Nutritional and Environmental Medicine, 31 (3)


  1. At the holistic/alternative veterinary clinic where I volunteer, the doctor has been doing fecal transplants. The dogs that have displayed "autistic" like behavior showed immediate improvement after an MBRT (microbiome restoration therapy)which is what she is calling the fecal transplant. Regarding CFS, she uses a method of treatment following a protocol developed by Dr. Plechner who wrote a book on his findings of adrenal disorders and hypothyroidism in dogs and cats. This guy was the first to develop the allergen free lamb and rice diet, but I digress. He discovered that balancing the gut was important for his treatment protocol to work when given orally, otherwise only IM injections made any improvement.

    1. Thanks for the comment.

      I agree that we can perhaps learn something from how we care for our animals/livestock in terms of our own health.

  2. Hi there, I loved the post! I came across your site randomly when searching CFS and fecal transplant. One question for you about the study from Borody: does it say if there was an antibiotic used like in the treatment of C. diff infections (using vancomycin then followed by fecal transplant)? I wonder if not using an antibiotic would decrease the effectiveness of the attachment of new flora to the intestinal wall and prevent it from creating permanent residency.

    1. Thanks for dropping by Tom.

      I can't remember anything being reported in the paper about use of antibiotics in this particular patient set.

      I can see your logic - a sort of antibiotic 'shock and awe' followed by fecal bacterial reconstruction. There are some potential issues I could envisage; not least the intricate connection between gut bacteria and the immune system. Perhaps this very recent article might offer more insight:


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